2004 2.5L SOHC Manual Turbo Swap Questions

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Hello! I have a 2004 manual Baja (non-turbo) with the 2.5L SOHC engine in it. The engine blew about a year ago and I purchased a 2006 automatic Baja (turbo) with the 2.5L DOHC to swap the engine with.

We now are ready to do the swap and we're looking at the ECM and we aren't sure if we can re-use our 2004 ECM or 2006 ECM or if I need to buy an ECM from a manual turbo Baja. Does the 2006 automatic turbo Baja use a ECM and TCM? If so, we were thinking the ECM should work since it's going to be manual and there's no need for a TCM. However, if they're all in one, I'm guessing I would need an ECM from a turbo manual Baja.

Any thoughts/ideas? I know it's kind of a complicated question and I've stumped a few shops on it.

Please let me know what you think! Thank you!
 

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